FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005420081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43187925
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1202480.2784296768136001No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA943690.21850783523403822No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG478730.11084811321683086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)