FastQCFastQC Report
Wed 1 May 2024
EGAF00005420128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30387993
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG531220.17481246622638094No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA510120.16786893428598593No Hit
TCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG428120.14088459214795793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)