FastQCFastQC Report
Sat 11 May 2024
EGAF00005420172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32979124
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA472260.143199679894469No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG369380.1120041878613877No Hit
TCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG347210.10528175339041751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)