FastQCFastQC Report
Wed 1 May 2024
EGAF00005420228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29884863
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC664990.22251733260413475No Hit
TCCTGGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC635790.21274649979154997No Hit
TCCTTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC503710.16855021219270774No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG471080.15763164114220635No Hit
TCCTCGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC337230.11284308045849165No Hit
TCCTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATCT312140.1044475258260344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)