EGAF00005420228 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005420228
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29884863
Sequences flagged as poor quality	0
Sequence length	76
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC	66499	0.22251733260413475	No Hit
TCCTGGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC	63579	0.21274649979154997	No Hit
TCCTTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC	50371	0.16855021219270774	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	47108	0.15763164114220635	No Hit
TCCTCGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC	33723	0.11284308045849165	No Hit
TCCTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATCT	31214	0.1044475258260344	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCTCGC	108055	38.78632	70
TCTAGCG	3865	35.773182	33
ATCGCAC	122875	35.45781	20
TTGCTCG	119250	35.42321	69
AATCGCA	123595	35.318687	19
TCGCACT	124380	35.04841	21
AAATCGC	124880	35.009678	18
ACCACGA	115425	34.943146	54
ACGAACT	121315	34.552895	57
ATTGCCG	4540	34.009285	62
CGAACTG	123530	33.993195	58
GACTCTT	125995	33.848434	36
CGCACTG	129020	33.74465	22
GGACTCT	127150	33.647648	35
CACGAAC	120150	33.643143	56
CCACGAA	120165	33.577282	55
TCCTATC	129515	33.05572	44
TGGACTC	130310	32.937443	34
CCTGGAC	130310	32.92977	32
TTCCTAT	130060	32.854156	43