FastQCFastQC Report
Thu 9 May 2024
EGAF00005420232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34729861
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC944080.27183523711770685No Hit
TCCTGGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC908720.26165379700195174No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG897260.2583540429372867No Hit
TCCTTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC780790.22481806074605365No Hit
GCTGCTGTCTTCCTAGATTCACTGAATCCACTTCTGTGTAGCACCTGGGT536620.15451256772953972No Hit
TCCTCGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC509250.14663174148609465No Hit
TCCTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATCT463490.13345576015982327No Hit
TCCTATCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC351250.1011377500186367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)