FastQCFastQC Report
Wed 1 May 2024
EGAF00005420284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35110996
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC1061640.30236681408866894No Hit
TCCTGGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC1020920.2907693077120342No Hit
TCCTTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC874260.24899891760404633No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG839820.23919002468628348No Hit
TCCTCGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC591830.16855972983506362No Hit
GCTGCTGTCTTCCTAGATTCACTGAATCCACTTCTGTGTAGCACCTGGGT587200.16724105462573605No Hit
TCCTGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATCT541440.15420810050503836No Hit
TCCTATCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTCCTATC447940.12757826636418973No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA355910.10136710448202609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)