EGAF00005420292 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005420292
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	35232108
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA	95257	0.27036985694980276	No Hit
TCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG	65520	0.1859667323908067	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCA	55514	0.1575665015559103	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	48236	0.13690920793044797	No Hit
CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAG	47768	0.13558087412765651	No Hit
GCTACGTACGAAACCCCGACCCAGAAGCAGGTCGTCTACGAATGGTTTAG	43068	0.12224076969791305	No Hit
GGTCGTCTACGAATGGTTTAGCGCCAGGTTCCCCACGAACGTGCGGTGCG	38742	0.1099621969823662	No Hit
GCTCTGCTACGTACGAAACCCCGACCCAGAAGCAGGTCGTCTACGAATGG	38344	0.10883254558597516	No Hit
CCTTGGTCCGTGTTACAAGACGGGTCGGGTGGGTAGCCGACGTCGCCGCC	35482	0.10070927348428882	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGTACGA	3490	35.18522	5
CGGACTA	2585	34.10504	5
TTATCGG	6725	33.087955	7
GTTATCG	6670	32.888195	6
TCTAGCG	8620	32.88343	33
TATCGGA	6775	32.741405	8
CGCCCTA	18840	32.117905	61
CGGAATT	7110	31.150812	11
GTCGGTA	1900	31.117468	4
CTGCGTA	6735	30.957178	2
CTAGCGG	9200	30.77292	34
TTTCCGA	22205	30.42542	7
GTTACGT	1935	30.190844	1
GCCGGTT	22920	30.076094	19
CGACCTG	22430	30.013115	11
ACCGTCC	23175	29.697163	10
ATGTACG	3715	29.569365	4
TCCGACC	23575	28.732794	9
CCGACCT	23525	28.600918	10
AACGGCG	10000	28.599619	49