FastQCFastQC Report
Wed 1 May 2024
EGAF00005420382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005420382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28729486
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG540800.18823866184031277No Hit
TCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTCCGCCAGGGCCG378330.13168700616502502No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA308670.10744014007072733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)