FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005422410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005422410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69272484
Sequences flagged as poor quality0
Sequence length35-75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCAT1233540.1780707040908191No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN784530.11325275992701518No Hit
CGGGGTCTCGCTATGTTGCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGG759470.10963516192085734No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGTTTGGAGGTTCTAGC747420.10789565449970005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)