FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005422559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005422559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46965706
Sequences flagged as poor quality0
Sequence length35-75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACCCCGGGTGGCCGCCCCACCGGGGCC553540.11786046610264946No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACCCCGGGTGGCCGCCCCACC537560.11445798344860397No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN527010.11221166354871788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)