FastQCFastQC Report
Wed 11 May 2022
EGAF00005422707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005422707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41430389
Sequences flagged as poor quality0
Sequence length35-75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACCCCGGGTGGCCGCCCCACCGGGGCC494090.11925787131759732No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN478110.11540079915735282No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACCCCGGGTGGCCGCCCCACC440140.10623602882415611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)