EGAF00005431796 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005431796
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57783709
Sequences flagged as poor quality	0
Sequence length	75
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCACGGACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA	2049011	3.5460011748293967	TruSeq Adapter, Index 23 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCACGGACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	504585	0.8732305501538504	TruSeq Adapter, Index 23 (97% over 37bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	279400	54.36775	44
TATGCCG	280310	54.15282	47
CTCGTAT	280610	53.977337	43
ACGCACG	281785	53.919804	31
CGTATGC	282640	53.73388	45
ACGGACA	284795	53.431744	35
CGCACGG	285060	53.37877	32
GTATGCC	284720	53.327385	46
GTCACGC	284680	53.29475	28
TCTCGTA	277580	53.19189	42
TCACGCA	285525	53.18173	29
CGGACAT	278990	53.132362	36
CACGGAC	286700	53.073444	34
ATGCCGT	285920	53.026997	48
GCCGTCT	285600	52.98664	50
AGTCACG	286485	52.98069	27
ATCTCGT	280695	52.617897	41
GCACGGA	289285	52.607937	33
CCGTCTT	288685	52.36909	51
TGCCGTC	289695	52.318687	49