EGAF00005431797 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005431797
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57783709
Sequences flagged as poor quality	0
Sequence length	75
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTGCGAGACGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAA	2088690	3.6146693179560345	Illumina Single End PCR Primer 1 (96% over 33bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTGCGAGACGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAA	513223	0.8881794001835361	Illumina Single End PCR Primer 1 (97% over 34bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCCGTAT	276885	54.585888	58
CGTATCA	277680	54.48654	60
CGCCGTA	276995	54.48274	57
GTTGCGA	279030	54.434155	30
CCGTATC	279000	54.138725	59
TGTTGCG	280880	54.004154	29
TCTCGGT	281660	53.870712	47
TTGCGAG	282160	53.862988	31
ACGTGTA	282850	53.702927	38
GTCGCCG	280875	53.680893	55
GACGTGT	283000	53.676895	37
TCGCCGT	281345	53.606358	56
GTATCAT	282440	53.585552	61
CGAGACG	284380	53.489635	34
GTAGATC	284825	53.39504	42
TGCGAGA	284755	53.392334	32
GGTCGCC	282545	53.324554	54
GTGGTCG	283265	53.32012	52
CGGTGGT	284175	53.197132	50
TGGTCGC	283705	53.108265	53