EGAF00005431819 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005431819
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	56882473
Sequences flagged as poor quality	0
Sequence length	75
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAAGCTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA	2014220	3.541020447546294	TruSeq Adapter, Index 2 (97% over 35bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAAGCTAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	418404	0.7355587370471744	TruSeq Adapter, Index 2 (97% over 36bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	267085	55.637905	44
TATGCCG	267065	55.62546	47
CTCGTAT	267985	55.084484	43
CGTATGC	270060	55.049263	45
GTATGCC	272740	54.465332	46
CAAGCTA	274870	54.189587	33
GCTAGAT	268535	54.151783	36
TCTCGTA	266870	54.095524	42
AAGCTAG	276235	53.956783	34
ATGCCGT	275465	53.909718	48
AGCTAGA	277255	53.73404	35
ATCTCGT	269080	53.662758	41
GCCGTCT	276500	53.561012	50
CTAGATC	271265	53.28291	37
TGCCGTC	280185	52.958782	49
CGTCTGA	282615	52.84102	15
CCGTCTT	281125	52.651615	51
GATCTCG	275515	52.43945	40
ACGTCTG	285020	52.4242	14
ACCAAGC	285300	52.2052	31