EGAF00005431822 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005431822
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	62562797
Sequences flagged as poor quality	0
Sequence length	75
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTATGTTCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAA	2237868	3.576994807313362	Illumina Single End PCR Primer 1 (96% over 31bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTATGTTCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAA	365022	0.5834489784719823	Illumina Single End PCR Primer 1 (96% over 32bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCCGTAT	276215	58.26056	58
CGCCGTA	276130	58.189285	57
CGTATCA	277630	58.041733	60
CCGTATC	279160	57.621235	59
TCTCGGT	281000	57.394615	47
GTAGATC	282815	57.15473	42
TAGATCT	283120	57.0907	43
GTATCAT	284295	56.703915	61
TCGCCGT	284910	56.362465	56
ATCATTA	286650	56.30796	63
GTCGCCG	285395	56.22274	55
GTAGGGA	287720	56.205765	17
GTATGTT	287495	56.18795	32
GTGTAGA	288610	56.099007	40
TGTAGGG	288860	56.006626	16
TATGTTC	288660	55.94819	33
GCGTCGT	289275	55.942905	10
GTGTAGG	289620	55.869926	15
TTCGTGT	289100	55.84515	37
CGGTGGT	288120	55.84418	50