EGAF00005431880 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005431880
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	70657135
Sequences flagged as poor quality	0
Sequence length	75
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTAAGTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA	1698073	2.403257646945351	TruSeq Adapter, Index 15 (97% over 40bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGTAAGTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	1275758	1.8055614624057428	TruSeq Adapter, Index 15 (97% over 41bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	168600	54.096134	1
TATGCCG	315755	39.17781	47
TCGTATG	316970	39.05195	44
CGTATGC	318670	38.836452	45
CTCGTAT	319665	38.66651	43
TAAGTAT	315770	38.3959	36
TATCTCG	315750	38.34107	40
GTATGCC	322925	38.330364	46
GTAAGTA	324475	38.16538	35
AAGTATC	319555	37.90953	37
TCTCGTA	319910	37.85517	42
ATGCCGT	326615	37.84662	48
CGTCTGA	327310	37.814125	15
GCCGTCT	326655	37.754696	50
ATCTCGT	321265	37.719402	41
ACGTCTG	328235	37.71171	14
ACACGTC	331605	37.362938	12
ATGTAAG	331895	37.355583	33
ACATGTA	332330	37.26174	31
GTATCTC	326245	37.145744	39