EGAF00005431881 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005431881
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	70657135
Sequences flagged as poor quality	0
Sequence length	75
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCATAGAGTGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAA	1753458	2.4816432197540985	Illumina Single End PCR Primer 1 (96% over 32bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCATAGAGTGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAA	1309212	1.8529084146986712	Illumina Single End PCR Primer 1 (96% over 32bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	171140	53.434647	1
CGCCGTA	316700	38.958614	57
GCCGTAT	317210	38.903507	58
CGTATCA	318155	38.78915	60
CCGTATC	321005	38.449787	59
GTAGATC	322005	38.409893	42
TCTCGGT	322220	38.400356	47
ATAGAGT	323385	38.283997	33
GTCATAG	323710	38.247665	30
CGTGTAG	324270	38.179585	14
TAGATCT	324015	38.17056	43
GTATCAT	324760	38.02466	61
TGTCATA	325590	37.998127	29
TCGCCGT	324820	37.98675	56
GTAGGGA	326285	37.917446	17
TAGAGTG	326795	37.891903	34
GTCGCCG	326450	37.866833	55
GGTCGCC	326620	37.857685	54
GCGTCGT	327730	37.82904	10
TCGTGTA	327720	37.77342	13