FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005431883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005431883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences219125176
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATACGA252450.030.62897715
CGGCATA266200.029.32161712
GCATACG297200.028.64117414
GCCGTAT328750.027.65558648
ATACGAG245850.027.62470416
CGTATCA333350.027.32153950
CGCCGTA352700.025.88435747
GCGTCGT405350.022.88805212
CCGTATC408500.022.74232149
GATCGGA441450.021.4662512
TCGCCGT436300.020.58326146
AGCGTCG483150.019.33242411
TGGTCGC474100.019.19434743
TCGTGTA515050.018.17682815
ATCGGAA536650.017.8665183
GTCGTGT525700.017.78862814
CGTGTAG538400.017.60284416
TACGAGA332000.017.56493217
CGTCGTG536750.017.55270813
AGAGCGT565400.016.8635149
Produced by FastQC (version 0.11.5)