FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005431922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005431922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141616351
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATATCG115350.012.21804735
CGTATCG72850.011.7025823
ATATCGC127300.011.26298336
CTCGGAT302700.011.0387921
CGATAAC118900.010.6127211
CGCGAAT46600.010.2111211
CTCGGTT228900.010.1938391
CGACGAT110250.010.1345911
GTCGTTA99200.09.74541520
TCGTATG153150.09.55508143
CGGAAAT235350.09.4951251
CCCGTAT142800.09.4288941
CTCAGAT858100.09.4022871
CTCGTTT234300.09.3571521
TATCGCT154050.09.35252137
GTATCGA113200.09.2739714
CTTGGAT852650.09.1936841
CGGAGAT323250.09.1484811
CTCGAAT253450.09.1368951
CTCGGGT278700.09.1311571
Produced by FastQC (version 0.11.5)