FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005432011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005432011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107062174
Sequences flagged as poor quality0
Sequence length76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCG73050.014.565043
GTATCGA91050.012.8851384
GCGCTAA101100.012.46096942
TATGCCG129350.012.055408549
TCGTATG131050.011.8989746
CGCTAAG116150.011.23907243
CCCGTAT119050.011.2220261
CTCGTAT138050.011.0576545
CGTATGC145200.010.95564847
TATATCG84050.010.33467535
CGGAAAT209500.010.0618681
CGATAAC101100.09.7277971
AGCGCTA138350.09.61322241
CCGGGAT219550.09.5852251
CCGTCAT179750.09.4131231
CGCAAAT113350.09.329561
CGCGAAT38650.09.3027671
CCGTATC138800.09.16624452
ATATCGC95550.09.16387336
CGCGGAT75400.08.9761751
Produced by FastQC (version 0.11.5)