EGAF00005432027 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005432027
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	67850527
Sequences flagged as poor quality	0
Sequence length	75
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGTACTCCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAA	569680	0.83961028040357	Illumina Single End PCR Primer 1 (96% over 33bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGTACTCCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAA	217127	0.32000783133195115	Illumina Single End PCR Primer 1 (97% over 34bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	84020	47.664207	57
GCCGTAT	85085	47.07165	58
CGTATCA	85735	46.734383	60
CCGTGTA	88290	45.50695	38
GTAGATC	88695	45.275913	42
CCGTATC	88830	45.226982	59
GTAGTAC	89845	44.67355	30
GCGTCGT	90805	44.341347	10
TCGCCGT	91110	44.000515	56
TGGTCGC	91375	43.905937	53
TCGTGTA	91700	43.8594	13
TCTCGGT	91960	43.77171	47
GGTCGCC	92005	43.676544	54
TAGATCT	92455	43.473083	43
GTGTAGT	92415	43.442413	28
GTCGTGT	93165	43.20305	12
TAGTACT	93740	43.03665	31
GTATCAT	93525	42.959778	61
ACTCCGT	93750	42.952305	35
GAGTGTA	93400	42.917778	26