EGAF00005432055 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005432055
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	68526928
Sequences flagged as poor quality	0
Sequence length	75
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCAGAATTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA	2634863	3.845003820979689	TruSeq Adapter, Index 5 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCAGAATTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	1723350	2.514850804343659	TruSeq Adapter, Index 5 (97% over 37bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCAGAATTATCTCGTATGCCGTCTTCTGCTTGGATCGGAAGAG	86817	0.12669034280947192	TruSeq Adapter, Index 5 (97% over 36bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	292010	47.450447	1
TATGCCG	519675	41.132797	47
CTCGTAT	520745	41.06078	43
TATCTCG	511755	41.057198	40
TCGTATG	522105	41.00432	44
TCTCGTA	516585	40.674816	42
TCACGCA	527000	40.673977	29
GTCACGC	526830	40.65284	28
AATTATC	517540	40.605614	37
GCCGTCT	524780	40.589466	50
ACGCAGA	529215	40.517815	31
CGCAGAA	530490	40.41653	32
ATCTCGT	520070	40.40888	41
GTATGCC	529560	40.38934	46
CGTATGC	530940	40.343674	45
CCGTCTT	528285	40.305504	51
AGTCACG	532300	40.23444	27
ATTATCT	523070	40.205345	38
TGCCGTC	530830	40.18925	49
ATGCCGT	533410	40.031727	48