FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005432077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005432077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106296908
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT68350.09.5789842
TCGTATG69100.09.47501243
CGTATGC70700.09.01688544
TATGCCG78850.08.19104546
GATCGGA100600.07.02994781
ATCGGAA122300.05.8897262
TCTCGTA118500.05.81589341
AATCTCG128000.05.43808839
Produced by FastQC (version 0.11.5)