EGAF00005432181 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005432181
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	155473957
Sequences flagged as poor quality	0
Sequence length	75
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAAAAAA	757889	0.4874700654849866	Illumina Single End PCR Primer 1 (100% over 58bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAAAAAAAAAAA	713560	0.45895789479391713	Illumina Single End PCR Primer 1 (100% over 57bp)
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTG	479462	0.3083873397523419	No Hit
CTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCGACTACGCCTTTCGGCCTCGCCTTAGGGGT	458046	0.29461268551877146	No Hit
GCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCCTTCGGGTTGTAAAGTACTTTCAGCGGGGAGGAAGGGAGT	302334	0.19445957756127605	No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAACAGCTTGCTGTTTCGCTG	225282	0.1449001519913718	No Hit
CGGGAACTCAAAGGAGACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACG	188156	0.12102091156012708	No Hit
CGGGAACGTATTCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACT	170853	0.10989171646284142	No Hit
CCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCG	169063	0.10874039823917261	No Hit
CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAGCCATGCCGCGTGTATGAAGAAGGCC	167739	0.10788880867038071	No Hit
CCCCCCTTCGCAGTAACACCAAGTACAGGAATATTAACCTGTTTCCCATCGACTACGCCTTTCGGCCTCGCCTTA	161231	0.10370289861471785	No Hit
TTCCGATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGGGTA	157824	0.10151153482251692	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGATCGG	214010	61.1012	1
TTGAACG	137755	42.364815	7
CAGATTG	139640	41.86685	3
AACGCTG	139190	41.644417	10
CTCAGAT	153425	39.33492	1
ATTGAAC	150940	39.118813	6
TCAGATT	153640	38.77919	2
ACGCTGG	153930	37.709465	11
GCCGTAT	435095	35.98058	47
CGTATCA	437265	35.901573	49
TCGCCGT	435705	35.86754	45
GTCGCCG	439575	35.729084	44
AGAGCGT	441395	35.71437	8
GTATCAT	440975	35.650494	50
GTAGATC	449550	35.61266	31
TGGTCGC	440850	35.58847	42
TCGGTGG	452510	35.506897	38
GATCGGA	447730	35.429585	1
TAGATCT	454205	35.2165	32
CTCGGTG	457015	35.071884	37