Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005432183 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 58620477 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTGTCGGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAA | 1568744 | 2.6761024138374037 | Illumina Single End PCR Primer 1 (96% over 32bp) |
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTGTCGGAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAA | 294211 | 0.5018911736252163 | Illumina Single End PCR Primer 1 (96% over 31bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 215955 | 0.0 | 59.848576 | 1 |
CGCCGTA | 216560 | 0.0 | 54.06744 | 58 |
GCCGTAT | 222350 | 0.0 | 53.516502 | 59 |
CGTATCA | 221695 | 0.0 | 53.406784 | 61 |
CCGTATC | 223120 | 0.0 | 53.03009 | 60 |
TCTCGGT | 228845 | 0.0 | 52.804707 | 48 |
TCGCCGT | 222095 | 0.0 | 52.7728 | 57 |
GTATCAT | 226035 | 0.0 | 52.358322 | 62 |
TGGTCGC | 228600 | 0.0 | 51.940296 | 54 |
GTCGCCG | 230480 | 0.0 | 51.833588 | 56 |
GGTCGCC | 230385 | 0.0 | 51.754154 | 55 |
GTAGATC | 238875 | 0.0 | 51.33434 | 43 |
CGGTGGT | 235225 | 0.0 | 51.3289 | 51 |
GTGGTCG | 234315 | 0.0 | 51.097904 | 53 |
CTCGGTG | 237025 | 0.0 | 50.880257 | 49 |
TAGATCT | 241500 | 0.0 | 50.814194 | 44 |
GAGTGTA | 247310 | 0.0 | 50.78642 | 39 |
TGTCGGA | 249365 | 0.0 | 50.68352 | 34 |
AGTGTAG | 246450 | 0.0 | 50.589863 | 40 |
TCGGAGT | 249820 | 0.0 | 50.4873 | 36 |