FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005432190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005432190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85734789
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT53000.08.45415942
CGTATGC57450.07.979295344
TCGTATG57650.07.95161343
TATGCCG61100.07.522654546
TATCTCG62950.07.39163439
GATCGGA80900.06.14411261
CGATGTA91250.05.43915634
TCTCGTA92700.05.242546641
ATCGGAA101350.05.0335292