EGAF00005432196 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005432196
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	71654115
Sequences flagged as poor quality	0
Sequence length	75
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per base sequence content$

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAAGTCCAAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAA	1850715	2.582845381594623	Illumina Single End PCR Primer 1 (96% over 32bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAAGTCCAAGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAA	549877	0.7674046354490597	Illumina Single End PCR Primer 1 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	249820	52.162655	57
GCCGTAT	250220	52.064358	58
CGTATCA	250940	51.88838	60
GTAAGTC	254545	51.481476	30
TCTCGGT	255700	51.31695	47
GTAGATC	256350	51.230274	42
CCGTATC	254395	51.205368	59
TAGATCT	257575	50.95748	43
CGTGTAG	258640	50.826073	14
GTGTAAG	257015	50.821068	28
GTATCAT	256780	50.730896	61
TGTAAGT	257635	50.726307	29
TAAGTCC	258930	50.64827	31
AGTGTAG	260265	50.45651	39
GGTCGCC	259830	50.414593	54
GTAGGGA	260810	50.405872	17
GAGTGTA	259190	50.40392	26
GCGTCGT	261160	50.385597	10
TGGTCGC	259975	50.36789	53
AGTGTAA	260270	50.18549	27