EGAF00005432384 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005432384
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25952928
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	292763	1.128053836545919	No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC	149516	0.5761045535979601	No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC	94312	0.3633963767016963	No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC	64803	0.2496943697451016	No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG	40995	0.15795905571810626	No Hit
GCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGG	38981	0.15019885232217342	No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA	34269	0.13204290475433061	No Hit
CGGGTGGCCGCCCCACCGGGGCCCGCGCGGCCAACCCCCGGGACGGGGAC	34036	0.131145125513391	No Hit
CTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCC	32695	0.12597807846575151	No Hit
CTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCAT	31882	0.12284548394693655	No Hit
CGGGGACCGGCGGGCCACGGGCCCGGCTCGGCGCGGCCGCCTCCGCGGCT	31360	0.12083415019684869	No Hit
CAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGG	30249	0.1165533230007805	No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA	29080	0.11204901427692474	No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC	27890	0.10746378982749076	No Hit
GGGGACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCAGGTCAAAACTCCCGTGCTG	27785	0.10705921119959952	No Hit
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGAT	26582	0.10242389606290282	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCGCG	5065	45.317978	22
ATATCGC	5585	41.46787	21
CGACGTA	1910	40.558575	35
ATCGCGG	6085	37.892403	23
GATATCG	6230	37.230057	20
CGCTCGA	2225	34.962822	31
TCGTATA	2600	34.33768	41
CTCGACG	2250	34.1179	33
TACGTTC	2650	33.914604	20
CTCGTAT	2685	33.502125	40
GTATGGC	6925	33.374977	2
GCTCGTA	2745	33.143852	39
TCGACGT	2405	32.496784	34
CGCTAAT	2385	32.189304	34
TCGCGGC	7525	30.68735	24
GTACTGG	7655	30.474909	1
TATGGCC	7915	29.379707	3
TCGCGAT	1240	29.276384	30
GGTGGCG	18715	28.217422	1
GACGTAG	2740	28.147343	36