EGAF00005432417 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005432417
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	38677288
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCGGGCCCGTGGCCCGCCG	144981	0.3748478952298827	No Hit
GTCCGCTCCGGGCCGGGACGGGGTCCGGGGAGCGTGGTTTGGGAGCCGCG	125661	0.3248960992301218	No Hit
CCCGCCTCCTCCCCGTTCACCGCCGGGGCGGCTCGTCCGCTCCGGGCCGG	84012	0.21721274769833915	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	70647	0.18265758447179647	No Hit
GCTACCTTTGCACGGTTAGGGTACCGCGGCCGTTAAACATGTGTCACTGGGCAGGCGGTGCCTCTAATACTGGTG	66461	0.17183469533851495	No Hit
GTCCGGGGAGCGTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCGGG	51956	0.1343320658883839	No Hit
GCCGAGCCGGGCCCGTGGCCCGCCGGTCCCCGTCCCGGGGGTTGGCCGCG	49241	0.12731244238220632	No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC	48962	0.12659108880643338	No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG	46918	0.12130633357747317	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	46089	0.11916295682365322	No Hit
CTTCGGTTCCCGCCTCCTCCCCGTTCACCGCCGGGGCGGCTCGTCCGCTC	45430	0.11745911450668414	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	44126	0.114087626826369	No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC	43065	0.11134441484108193	No Hit
GTGGTTTGGGAGCCGCGGAGGCGGCCGCGCCGAGCCGGGCCCGTGGCCCG	42690	0.1103748535833226	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCGCG	6470	41.07345	22
TCGACGT	3010	35.50546	34
ATATCGC	7620	35.14769	21
ATCGCGG	7690	34.69299	23
GATATCG	8125	33.176445	20
CGACGTA	3275	32.73921	35
ACCGCTA	3190	30.237734	32
CGCTAAT	3210	30.158522	34
CGTATAA	3245	29.736357	42
CTCGACG	3685	29.283472	33
ACCGCGT	5345	28.436718	6
CCGCGTT	5365	28.260721	7
CGCTCGA	3890	27.828697	31
CGCGATT	1250	27.479767	31
TCCTACG	3645	27.12575	17
GCGTACG	2420	26.95573	2
GTATGGC	9975	26.471613	2
CGTACGG	2510	26.127228	3
CGTTCTA	3785	25.499432	44
CGCGTTC	5950	25.365524	8