FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005432966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005432966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences293011073
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGGACT7580312625.870396372358258No Hit
CTTTCGAC7565215625.818872722260565No Hit
TGCATCTG7243479824.720839816179915No Hit
GAACATGA6459866222.046491737873673No Hit
TGCATCTA4764020.16258839473960768No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)