FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005432968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005432968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences271591287
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCGCGA7060013425.99499224730284No Hit
CGCAATTT6860009525.258577238525326No Hit
ACAGCAAC6804237825.053225658155963No Hit
GAGTTGCG5844745121.52037042337076No Hit
CGCAATTA10896970.4012267889875274No Hit
TTTCGCAA3480900.12816685094908806No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)