FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005432972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005432972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences294263584
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACACTC9102973430.93476017746049No Hit
ATTGGGAA8452112628.72293093528012No Hit
CAGTCTGG8153619727.708558392328968No Hit
GGCATACT3072468210.441211101404923No Hit
ATTGGAAA8788890.2986740622312274No Hit
TCACACTA7465700.2537079137865731No Hit
CAGTCTGA6030130.20492274028715696No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)