FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005438285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005438285
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences23172936
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGTAA21250.013.05867531
GTTTTTT210700.012.9770991
CGCGTTT5950.012.6207011
GTACGCT10750.012.01902538
GTTTTAT129100.011.7017661
CTCAAAT88600.011.3921061
CTTTAAT91350.011.339291
CTCAACT83150.011.2888121
GTTTTTC120500.011.0706071
CTCGATT20400.011.0431141
CGCAAAT17100.010.9785341
GGAAAAT143250.010.7617351
CGCAATC9950.010.6546621
AAATCCA137350.010.6348514
GTTTTCT149400.010.6291821
CGAAAAC21650.010.60954951
CTCAGAT97850.010.6086111
CGAAAAT30050.010.5102511
CTTGAAT77300.010.4288141
GTTTGAT77400.010.4153391
Produced by FastQC (version 0.11.5)