FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005438288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005438288
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences23095003
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTTTTT206400.013.3798461
GGAAAAT132700.011.2395461
CGGAAAT23300.011.0366121
GCCGAAT16600.010.7764511
CGAAAAT25600.010.7438261
TCGCATC24800.010.7290722
GTTTTTC116200.010.6994751
GTTTGAT74950.010.6511
GTTTTAT125700.010.5490471
CGGGTAA16450.010.54568931
CTCGGAT26500.010.4633231
GTTTAAT72950.010.391261
GTTTTCT144400.010.3133761
AATCCAA85600.010.2568135
AAATCCA139450.010.0691514
CTCGAAT21900.09.8021411
CGAAAAC21250.09.7862841
GAAAAAT188050.09.7625591
CTCGCAT24450.09.6943981
CTCAACT76950.09.6767481
Produced by FastQC (version 0.11.5)