FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005440693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005440693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46168675
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACACCTTGGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA8333881.8050940383279355TruSeq Adapter, Index 8 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACCTTGGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA6775541.4675621511771781TruSeq Adapter, Index 8 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)