FastQCFastQC Report
Thu 12 May 2022
EGAF00005441035

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441035
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences81600779
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTCACGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA5878620.7204122401821679TruSeq Adapter, Index 9 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTCACGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA2303400.2822767169906552TruSeq Adapter, Index 9 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)