FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005441043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73929724
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCAGGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA8708301.1779159354091462TruSeq Adapter, Index 14 (97% over 39bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCAGGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA3007740.4068377152334561TruSeq Adapter, Index 14 (97% over 40bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)