EGAF00005441062 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005441062
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	40480100
Sequences flagged as poor quality	0
Sequence length	75
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACAGGCGCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAA	982059	2.426029085896527	Illumina Single End PCR Primer 1 (97% over 34bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACAGGCGCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAA	507039	1.252563605327062	Illumina Single End PCR Primer 1 (97% over 35bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	82960	44.9758	1
CGCCGTA	158870	44.418545	57
GCGTGTA	160305	44.320488	38
CGTATCA	159660	44.288063	60
GCCGTAT	159535	44.27724	58
CGCGTGT	161070	44.10801	37
GGCGCGT	161145	44.09039	35
CCGTATC	160835	43.925903	59
TCTCGGT	162025	43.75265	47
GTAGATC	162615	43.607788	42
AGGCGCG	163120	43.600967	34
GGTCGCC	162330	43.57715	54
TAGATCT	163025	43.47669	43
GTATCAT	162915	43.407375	61
GCGCGTG	164220	43.268677	36
GAGTGTA	164895	43.064415	26
TGGTCGC	164295	43.04756	53
TCGGTGG	165245	43.002213	49
GTCGCCG	164605	42.966385	55
AGTGTAC	165695	42.88356	27