FastQCFastQC Report
Thu 12 May 2022
EGAF00005441141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58416682
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTACTCCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA14155012.4231109188981326TruSeq Adapter, Index 14 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTACTCCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA12357992.1154898869470196TruSeq Adapter, Index 14 (97% over 38bp)
GTGAAAGATGAGCTGGAGGACCGCAATAGGGGTAGGTCCCCTGTGGAAAAAGGGTCAGAGGCCAAAGGATGGGAG584690.10008956003355342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)