FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005441176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43369600
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC2484000.572751420349738No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1370230.3159425035047591No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC1364780.31468586290858114No Hit
GTTTGATCCTGGCTCAGATTGAACGCTGGCGGCATGCCTTACACATGCAA1346570.31048706928355346No Hit
CTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCC848560.1956577879436287No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA823110.1897896222238619No Hit
CAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGG561930.1295677156349148No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG530890.12241062864310485No Hit
GTGCATGTGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAG504050.11622196192724858No Hit
CCGGGCCCGGCGCGCCGGGGGCCGCTACCGGCCTCACACCGTCCACGGGC490080.11300081162842175No Hit
GCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGG473830.10925394746550579No Hit
GTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT471960.10882276986645023No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)