FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005441191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46853148
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA748290.159709652807107No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT554230.11829087770153673No Hit
CCCGTCCCGGGGGTTGGCCGCGCGGGCCCCGGTGGGGCGGCCACCCGGGG495530.1057623705455181No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)