FastQCFastQC Report
Wed 11 May 2022
EGAF00005441799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences313847525
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC8910891828.39242335908177No Hit
GGTTTACT8859148028.227554128394033No Hit
AACCGTAA7036650122.420600895291432No Hit
CTAAACGG6578062620.959421617232763No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)