FastQCFastQC Report
Thu 12 May 2022
EGAF00005441805

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441805
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences346355544
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGGCGTC9845502228.425998574459083No Hit
GGTTTACT9594605727.701608552857465No Hit
AACCGTAA7804947922.53449680597577No Hit
CTAAACGG7390498621.337896066707685No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)