FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005441817

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441817
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences285803272
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG8303612329.05359424996366No Hit
CCACTTAT7652032426.773774654336357No Hit
GGTAACGC7066435824.724824703896324No Hit
TTGGCATA5558246719.44780639180366No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)