FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005441820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences278389888
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACTGGCG8053399928.928492905604386No Hit
CCACTTAT7483787526.88239703591533No Hit
GGTAACGC6901348524.7902269352542No Hit
TTGGCATA5400452919.398883123226085No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)