FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005441826

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441826
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences276931143
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGGA8069337129.138424131662216No Hit
GCTGAATT7353834026.554738193529936No Hit
ATGCTCCG7342165726.512603893018994No Hit
TGAAGTAC4927777517.794233781788854No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)