FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005441829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences268431516
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGGA7789639829.019095507399363No Hit
GCTGAATT7165195726.692825815579717No Hit
ATGCTCCG7088546626.407281475845778No Hit
TGAAGTAC4799769517.88079720117514No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)