FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005441850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences276226043
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC8316985930.109347437598416No Hit
ACCCTCCT7949215128.777934961042035No Hit
TGGAATTA6460682623.389114689667405No Hit
CAATGGAG4895720717.723602911692147No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)