FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005441874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005441874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences315274032
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG10390176132.956016180869604No Hit
GGACACGT8124245125.768836870142227No Hit
TACTCTTC7773819024.657339999381872No Hit
ATGAGAAA5239163016.617806949606305No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)